PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G171000.1
Common NamePHAVU_002G171000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ZF-HD
Protein Properties Length: 368aa    MW: 39862.9 Da    PI: 8.0813
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G171000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1092.5e-3460118360
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 
                          v+YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr+++e+
  Phvul.002G171000.1  60 VVTYKECLKNHAASLGGHALDGCGEFMPSSSTNpTDPRSLKCAACGCHRNFHRRDPQEH 118
                         689**************************99999********************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.8E-2961115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-2361120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.3E-3262114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.82263114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.7E-28227293IPR009057Homeodomain-like
SuperFamilySSF466899.86E-18227293IPR009057Homeodomain-like
TIGRFAMsTIGR015657.9E-26232289IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDLTSSSTHT VQTLDADTRI TPPINPTNNT TPKSLSFTNG TPKRHPTTIG APLPLPPPMV  60
VTYKECLKNH AASLGGHALD GCGEFMPSSS TNPTDPRSLK CAACGCHRNF HRRDPQEHNN  120
LNYNIHSTNT AAAANNNPTF LSCIYTPSAP APISQRAMSQ STSPSLSSSP SHSPSPMSSP  180
SPPPLSHVPP YHASAPHMLL ALGTGYSTPS DEHHHHRGLT FSSVMLKSEN PKKRYRTKFS  240
KEQKEKMHSF SEKLGWRMQK GDDGLVQQFC NDIGVSRGVF KVWMHNNKNT LRRRLDQGEN  300
ANPNANANSS QSVGDHDDGN NTSGGGGFDS DINNPYNPNS NNNNDIHMNE EDDGCRNVHV  360
SLNGLSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-232332901875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158652.10.0hypothetical protein PHAVU_002G171000g
TrEMBLV7CP240.0V7CP24_PHAVU; Uncharacterized protein
STRINGGLYMA07G35760.21e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-57zinc finger homeodomain 1